Let KAYAK do the searching
Based on KAYAK hotel searches, the most popular destination is Nakatsugawa (38% of total searches to Gifu Prefecture). The next most popular destinations are Takayama (25%) and Shirakawa (25%). Searches for hotels in Seki (13%) are also popular.
KAYAK users have found double rooms in Gifu Prefecture for as cheap as $34 (Takayama) in the last 3 days. The average price is $492.