Let KAYAK do the searching
Based on KAYAK hotel searches, the most popular destination is Puerto Ayora (33% of total searches to Galapagos). The next most popular destinations are San Cristobal (33%) and Puerto Villamil (33%).
KAYAK users have found double rooms in Galapagos for as cheap as $37 (Puerto Villamil) in the last 3 days. The average price is $198.
In the last 72 hours, users have found Galapagos hotels for tonight for as low as $26 (Puerto Villamil). Users have also found 3-star hotels from $37 (Puerto Villamil) and 4-star+ hotels from $127 (Puerto Villamil).